Abstract:Objective To study the presence of virulence genes and associated mobile genetic elements in Staphylococcus aureus causing pediatric infections. Methods A total of 109 Staphylococcus aureus strains collected between June 2005 and July 2009 were detected for the presence of 19 superantigen genes,2 exfoliative toxin genes and 3 adhesin genes by polymerase chain reaction. The distribution of virulence genes was analyzed between strains collected from different infections. Results 60 Staphylococcus aureus strains were isolated from children with pneumonia,49 from children with skin and soft tissue infections. Of the strains,90.8% harbored superantigen genes,with sek and seq as the most frequent genes (57.8%),followed by seb (45.9%) and sea (40.4%). The sed and etd genes were not found in any of the strains tested. Thirty-seven superantigen genotypes were observed,of which the genotypes seb-sek-seq ( 20.2%) were the majority. About 78.4% (29/37) of the superantigen genotypes could be considered combinations of the superantigenic toxin gene-encoding profiles of mobile genetic elements. sek-seq without seb was found in 12 strains,Seb-seq without sek and seb-sek without seq was respectively found in 1 strain.10 of the tst-1-positive strains harbored seb. 4 of the sej-positive strains harbored ser.3 adhesin genes bbp、sdrE and cna were present in 91.7%、77.1%、30.3% of the strains,respectively. Seb,seq,bbp,sdrE were significantly associated with skin and soft tissue infections(P < 0.05). Seg,sei,sen,seo and cna were significantly associated with pneumonia(P < 0.05). Conclusion The distribution of superantigen genes in Staphylococcus aureus isolated from children with pneumonia and skin and soft tissue infections implies the existence of new types or variants of mobile genetic elements in these strains. The frequencies of carriage of the 3 adhesin genes differ from other geographic areas. The roles of virulence genes in these two kinds of infections need further study.